Escherichia coli_D
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers GN02270
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.77%
CheckM Contamination 0.46%
CheckM Strain Heterogeneity 76.92
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 374
N50 Contigs 38,111 bp
Longest Contig 169,852 bp
Scaffold Count 374
N50 Scaffolds 38,111 bp
Longest Scaffold 169,852 bp
Genome Size 5,275,874 bp
Protein Count 5,202
Coding Density 87.82%
GC Percentage 50.67%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM151939v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03922933
Country USA
Date 2016-1-20
Genbank Assembly Accession GCA_001519395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude 36 N 78.9 W
Molecule Count N/A
CDS Count 5,689
Refseq Category na
Seq Rel Date 2016/01/20
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter JCVI
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQST00000000.1