Escherichia coli_D
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers GN02277
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.73%
CheckM Strain Heterogeneity 25.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 251
N50 Contigs 68,088 bp
Longest Contig 246,908 bp
Scaffold Count 251
N50 Scaffolds 68,088 bp
Longest Scaffold 246,908 bp
Genome Size 5,302,405 bp
Protein Count 5,132
Coding Density 87.92%
GC Percentage 50.49%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM151924v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03922934
Country USA
Date 2016-1-20
Genbank Assembly Accession GCA_001519245.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Bodily fluid
Latitude Longitude 36 N 78.9 W
Molecule Count N/A
CDS Count 5,578
Refseq Category na
Seq Rel Date 2016/01/20
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter JCVI
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQSU00000000.1