Pseudomonas_B oryzihabitans_E
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_B; s__Pseudomonas_B oryzihabitans_E
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas oryzihabitans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas putida group; s__Pseudomonas oryzihabitans
NCBI Strain Identifiers USDA-ARS-USMARC-56511
GTDB Type Material Designation not type material
GTDB Representative of Species True (4 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.53%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 1
N50 Contigs 4,834,356 bp
Longest Contig 4,834,356 bp
Scaffold Count 1
N50 Scaffolds 4,834,356 bp
Longest Scaffold 4,834,356 bp
Genome Size 4,834,356 bp
Protein Count 4,378
Coding Density 89.10%
GC Percentage 65.11%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM151881v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04158501
Country USA:Kansas
Date 2016-1-20
Genbank Assembly Accession GCA_001518815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count 1
CDS Count 4,353
Refseq Category na
Seq Rel Date 2016/01/20
Spanned Gaps 0
Species Taxid 47885
SSU Count 5
Submitter USDA-ARS-USMARC
Taxid 47885
Total Gap Length 0
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None