Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Infantis
NCBI Strain Identifiers 120100
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.9%
CheckM Strain Heterogeneity 30.0
5S Count 8
16S Count 4
23S Count 5
tRNA Count 20
Contig Count 988
N50 Contigs 263,658 bp
Longest Contig 915,798 bp
Scaffold Count 983
N50 Scaffolds 263,658 bp
Longest Scaffold 915,798 bp
Genome Size 5,248,081 bp
Protein Count 5,442
Coding Density 85.80%
GC Percentage 52.30%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM151849v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04217889
Country Israel
Date 2016-1-19
Genbank Assembly Accession GCA_001518495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source food
Latitude Longitude 31.719198685684482 N 35.30917746477519 E
Molecule Count N/A
CDS Count 5,746
Refseq Category na
Seq Rel Date 2016/01/19
Spanned Gaps 5
Species Taxid 28901
SSU Count 9
Submitter Sheba Medical Center
Taxid 595
Total Gap Length 726
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMXO00000000.1