Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas syringae group genomosp. 3; x__Pseudomonas syringae pv. tomato
NCBI Strain Identifiers A9
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 188
N50 Contigs 149,532 bp
Longest Contig 291,797 bp
Scaffold Count 188
N50 Scaffolds 149,532 bp
Longest Scaffold 291,797 bp
Genome Size 6,309,086 bp
Protein Count 5,863
Coding Density 88.21%
GC Percentage 58.58%
Ambiguous Bases N/A
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM151846v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04256406
Country USA: California
Date 2016-1-19
Genbank Assembly Accession GCA_001518465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source plant
Latitude Longitude 38.5556 N 121.46890000000002 W
Molecule Count N/A
CDS Count 6,078
Refseq Category na
Seq Rel Date 2016/01/19
Spanned Gaps 0
Species Taxid 251701
SSU Count 1
Submitter University of California
Taxid 323
Total Gap Length 0
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNKY00000000.1