Limnohabitans sp001517545
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Limnohabitans; s__Limnohabitans sp001517545
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Limnohabitans; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Comamonadaceae; g__Limnohabitans; s__Limnohabitans sp. Rim47
NCBI Strain Identifiers DNA_1
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.26%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 10
N50 Contigs 526,901 bp
Longest Contig 796,410 bp
Scaffold Count 9
N50 Scaffolds 597,513 bp
Longest Scaffold 1,076,521 bp
Genome Size 2,942,326 bp
Protein Count 2,772
Coding Density 92.16%
GC Percentage 58.96%
Ambiguous Bases 46
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Rim47_scaffolds
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3719354
Country None
Date 2016-1-15
Genbank Assembly Accession GCA_001517545.1
Genome Category Isolate
Genome Representation full
Isolate DNA_1
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,787
Refseq Category na
Seq Rel Date 2016/01/15
Spanned Gaps 1
Species Taxid 1100721
SSU Count 1
Submitter UZH
Taxid 1100721
Total Gap Length 17
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FBYA00000000.1