Alcaligenes faecalis_C
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Alcaligenes; s__Alcaligenes faecalis_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Alcaligenes; s__Alcaligenes faecalis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Alcaligenes; s__Alcaligenes faecalis; sb__Alcaligenes faecalis subsp. phenolicus
NCBI Strain Identifiers IITR89
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_004319585.1)
Genome Characteristics
CheckM Completeness 99.43%
CheckM Contamination 0.12%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 57
N50 Contigs 151,382 bp
Longest Contig 354,744 bp
Scaffold Count 23
N50 Scaffolds 604,195 bp
Longest Scaffold 1,040,372 bp
Genome Size 3,774,065 bp
Protein Count 3,535
Coding Density 88.82%
GC Percentage 57.59%
Ambiguous Bases 5
GTDB representative GCA_004319585.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM151686v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04371300
Country India: River Cauvery
Date 2016-1-15
Genbank Assembly Accession GCA_001516865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 11.363656 N 77.741606 E
Molecule Count N/A
CDS Count 3,434
Refseq Category na
Seq Rel Date 2016/01/15
Spanned Gaps 34
Species Taxid 511
SSU Count 1
Submitter CSIR - Indian Institute of Toxicology Research
Taxid 232846
Total Gap Length 809
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQAS00000000.1