Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers M1486PM
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000254135.2)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 55
N50 Contigs 93,419 bp
Longest Contig 344,539 bp
Scaffold Count 55
N50 Scaffolds 93,419 bp
Longest Scaffold 344,539 bp
Genome Size 1,780,967 bp
Protein Count 1,899
Coding Density 93.25%
GC Percentage 31.25%
Ambiguous Bases N/A
GTDB representative GCA_000254135.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM151681v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04358091
Country Colombia: Bogota
Date 2016-1-29
Genbank Assembly Accession GCA_001516815.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source retail store
Latitude Longitude None
Molecule Count N/A
CDS Count 1,859
Refseq Category na
Seq Rel Date 2016/01/29
Spanned Gaps 0
Species Taxid 195
SSU Count 1
Submitter Corpoica
Taxid 195
Total Gap Length 0
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQXK00000000.2