Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia albertii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia albertii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia albertii
NCBI Strain Identifiers HIPH08472
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000759775.1)
Genome Characteristics
CheckM Completeness 98.6%
CheckM Contamination 0.67%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 0
23S Count 1
tRNA Count 18
Contig Count 88
N50 Contigs 287,421 bp
Longest Contig 569,212 bp
Scaffold Count 85
N50 Scaffolds 294,711 bp
Longest Scaffold 686,091 bp
Genome Size 5,028,180 bp
Protein Count 4,821
Coding Density 87.45%
GC Percentage 49.40%
Ambiguous Bases 23
GTDB representative GCA_000759775.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM151498v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00026638
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001514985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source isolated from diarrheal patient
Latitude Longitude None
Molecule Count N/A
CDS Count 5,122
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 3
Species Taxid 208962
SSU Count 1
Submitter University of Miyazaki
Taxid 208962
Total Gap Length 55
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBVZ00000000.1