Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia albertii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia albertii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia albertii
NCBI Strain Identifiers NIAH_Bird_16
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000759775.1)
Genome Characteristics
CheckM Completeness 98.6%
CheckM Contamination 0.58%
CheckM Strain Heterogeneity 25.0
5S Count 0
16S Count 0
23S Count 0
tRNA Count 15
Contig Count 160
N50 Contigs 93,093 bp
Longest Contig 308,171 bp
Scaffold Count 145
N50 Scaffolds 102,938 bp
Longest Scaffold 308,171 bp
Genome Size 5,013,639 bp
Protein Count 4,875
Coding Density 87.50%
GC Percentage 49.35%
Ambiguous Bases 39
GTDB representative GCA_000759775.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM151466v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00026644
Country None
Date 2015-11-6
Genbank Assembly Accession GCA_001514665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source isolated from diarrheal patient
Latitude Longitude None
Molecule Count N/A
CDS Count 5,162
Refseq Category na
Seq Rel Date 2015/11/06
Spanned Gaps 15
Species Taxid 208962
SSU Count 0
Submitter University of Miyazaki
Taxid 208962
Total Gap Length 369
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBVJ00000000.1