Pseudomonas_B sp001512295
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_B; s__Pseudomonas_B sp001512295
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. EpS/L25
NCBI Strain Identifiers EpSL25
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.53%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 36
N50 Contigs 279,044 bp
Longest Contig 807,183 bp
Scaffold Count 18
N50 Scaffolds 870,358 bp
Longest Scaffold 1,664,566 bp
Genome Size 5,435,234 bp
Protein Count 4,899
Coding Density 87.92%
GC Percentage 65.46%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM151229v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04216969
Country Italy: Casola Valsenio
Date 2016-1-12
Genbank Assembly Accession GCA_001512295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stem and leaf
Latitude Longitude None
Molecule Count N/A
CDS Count 4,885
Refseq Category na
Seq Rel Date 2016/01/12
Spanned Gaps 18
Species Taxid 1749078
SSU Count 1
Submitter University of Florence
Taxid 1749078
Total Gap Length 1800
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNUP00000000.1