Mesorhizobium loti_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Mesorhizobium; s__Mesorhizobium loti_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Phyllobacteriaceae; g__Mesorhizobium; s__Mesorhizobium loti
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Phyllobacteriaceae; g__Mesorhizobium; s__Mesorhizobium loti
NCBI Strain Identifiers UFLA 01-765
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 97.77%
CheckM Contamination 1.26%
CheckM Strain Heterogeneity 40.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 185
N50 Contigs 123,481 bp
Longest Contig 366,840 bp
Scaffold Count 185
N50 Scaffolds 123,481 bp
Longest Scaffold 366,840 bp
Genome Size 7,464,539 bp
Protein Count 7,792
Coding Density 85.22%
GC Percentage 62.97%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM151089v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04351373
Country Brazil: Vazante; Minas Gerais
Date 2016-01-11
Genbank Assembly Accession GCA_001510895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Soil from zinc mining area
Latitude Longitude 17.928448659450826 S 46.82048075047078 W
Molecule Count N/A
CDS Count 7,305
Refseq Category na
Seq Rel Date 2016/01/11
Spanned Gaps 0
Species Taxid 381
SSU Count 1
Submitter Federal University of Lavras
Taxid 381
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LPWA00000000.1