Flavobacterium psychrophilum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium psychrophilum
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium psychrophilum
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium psychrophilum
NCBI Strain Identifiers Pullman
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002217405.1)
Genome Characteristics
CheckM Completeness 96.11%
CheckM Contamination 0.8%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 245
N50 Contigs 70,371 bp
Longest Contig 197,778 bp
Scaffold Count 245
N50 Scaffolds 70,371 bp
Longest Scaffold 197,778 bp
Genome Size 2,713,260 bp
Protein Count 2,490
Coding Density 87.11%
GC Percentage 32.59%
Ambiguous Bases N/A
GTDB representative GCA_002217405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM151079v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04279589
Country USA
Date 2016-1-11
Genbank Assembly Accession GCA_001510795.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,474
Refseq Category na
Seq Rel Date 2016/01/11
Spanned Gaps 0
Species Taxid 96345
SSU Count 1
Submitter South Dakota State University
Taxid 96345
Total Gap Length 0
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNNF00000000.1