Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia pestis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis
NCBI Strain Identifiers Yp1945
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460465.1)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 12
N50 Contigs 798,621 bp
Longest Contig 1,163,597 bp
Scaffold Count 12
N50 Scaffolds 798,621 bp
Longest Scaffold 1,163,597 bp
Genome Size 4,825,865 bp
Protein Count 4,303
Coding Density 83.53%
GC Percentage 47.64%
Ambiguous Bases N/A
GTDB representative GCA_900460465.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM150986v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04012733
Country USA: Texas
Date 2016-1-10
Genbank Assembly Accession GCA_001509865.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Flea captured from prairie dog burrow showing signs of recent die-off
Latitude Longitude None
Molecule Count 3
CDS Count 4,524
Refseq Category na
Seq Rel Date 2016/01/10
Spanned Gaps 0
Species Taxid 632
SSU Count 6
Submitter Pacific Northwest National Laboratory
Taxid 632
Total Gap Length 0
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LIXX00000000.1