Streptococcus equi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus equi
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus equi
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; x__Streptococcus dysgalactiae group; s__Streptococcus equi; sb__Streptococcus equi subsp. equi
NCBI Strain Identifiers CF22
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900637675.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 90
N50 Contigs 43,250 bp
Longest Contig 136,680 bp
Scaffold Count 90
N50 Scaffolds 43,250 bp
Longest Scaffold 136,680 bp
Genome Size 2,106,999 bp
Protein Count 2,003
Coding Density 85.05%
GC Percentage 41.28%
Ambiguous Bases N/A
GTDB representative GCA_900637675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM150963v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04226682
Country USA: New York
Date 2016-1-8
Genbank Assembly Accession GCA_001509635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Nasal cavity
Latitude Longitude None
Molecule Count N/A
CDS Count 1,991
Refseq Category na
Seq Rel Date 2016/01/08
Spanned Gaps 0
Species Taxid 1336
SSU Count 1
Submitter University of Kentucky
Taxid 148942
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMTN00000000.1