Chlorobium limicola_A
Isolate MQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Chlorobia; o__Chlorobiales; f__Chlorobiaceae; g__Chlorobium; s__Chlorobium limicola_A
Filtered NCBI Taxonomy d__Bacteria; p__Chlorobi; c__Chlorobia; o__Chlorobiales; f__Chlorobiaceae; g__Chlorobium; s__Chlorobium limicola
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Chlorobi; c__Chlorobia; o__Chlorobiales; f__Chlorobiaceae; x__Chlorobium/Pelodictyon group; g__Chlorobium; s__Chlorobium limicola
NCBI Strain Identifiers Frasassi
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 89.78%
CheckM Contamination 1.93%
CheckM Strain Heterogeneity 75.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 259
N50 Contigs 16,277 bp
Longest Contig 80,119 bp
Scaffold Count 259
N50 Scaffolds 16,277 bp
Longest Scaffold 80,119 bp
Genome Size 2,087,449 bp
Protein Count 2,113
Coding Density 88.26%
GC Percentage 50.67%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM150957v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04217978
Country Italy: Frasassi caves
Date 2016-1-8
Genbank Assembly Accession GCA_001509575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sediment-water interface in an artificial aquarium in the Frasassi cave system
Latitude Longitude 43.4008 N 12.961900000000014 E
Molecule Count N/A
CDS Count 2,059
Refseq Category na
Seq Rel Date 2016/01/08
Spanned Gaps 0
Species Taxid 1092
SSU Count 1
Submitter Pennsylvania State University
Taxid 1092
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMBR00000000.1