Catabacter hongkongensis
Isolate HQ 5S/16S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia_A; o__Christensenellales; f__Christensenellaceae; g__Catabacter; s__Catabacter hongkongensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Catabacteriaceae; g__Catabacter; s__Catabacter hongkongensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Catabacteriaceae; g__Catabacter; s__Catabacter hongkongensis
NCBI Strain Identifiers ABBA15k
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000981035.1)
Genome Characteristics
CheckM Completeness 97.9%
CheckM Contamination 3.5%
CheckM Strain Heterogeneity 60.0
5S Count 2
16S Count 1
23S Count 0
tRNA Count 19
Contig Count 113
N50 Contigs 46,494 bp
Longest Contig 165,617 bp
Scaffold Count 113
N50 Scaffolds 46,494 bp
Longest Scaffold 165,617 bp
Genome Size 2,797,114 bp
Protein Count 2,625
Coding Density 89.73%
GC Percentage 48.79%
Ambiguous Bases 83
GTDB representative GCA_000981035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM150738v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04209960
Country Sweden: Falun
Date 2016-1-7
Genbank Assembly Accession GCA_001507385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood
Latitude Longitude 60.6015 N 15.6293 E
Molecule Count N/A
CDS Count 2,616
Refseq Category na
Seq Rel Date 2016/01/07
Spanned Gaps 0
Species Taxid 270498
SSU Count 1
Submitter Uppsala University
Taxid 270498
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLYX00000000.1