Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea vagans_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea vagans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea vagans
NCBI Strain Identifiers ND02
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 1
N50 Contigs 4,313,264 bp
Longest Contig 4,313,264 bp
Scaffold Count 1
N50 Scaffolds 4,313,264 bp
Longest Scaffold 4,313,264 bp
Genome Size 4,313,264 bp
Protein Count 3,953
Coding Density 88.08%
GC Percentage 53.88%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM150616v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03068907
Country Malaysia
Date 2016-1-7
Genbank Assembly Accession GCA_001506165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source waterfall
Latitude Longitude None
Molecule Count 1
CDS Count 3,967
Refseq Category na
Seq Rel Date 2016/01/07
Spanned Gaps 0
Species Taxid 470934
SSU Count 7
Submitter UNIVERSITY OF MALAYA
Taxid 470934
Total Gap Length 0
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None