Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers 0C4A;RP45
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.33%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 66.67
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 65
N50 Contigs 216,197 bp
Longest Contig 795,997 bp
Scaffold Count 65
N50 Scaffolds 216,197 bp
Longest Scaffold 795,997 bp
Genome Size 6,339,431 bp
Protein Count 5,880
Coding Density 89.74%
GC Percentage 66.49%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM150024v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04256133
Country Germany: Hannover
Date 2016-1-6
Genbank Assembly Accession GCA_001500245.1
Genome Category Isolate
Genome Representation full
Isolate RP45
Isolation Source cystic fibrosis airway
Latitude Longitude None
Molecule Count N/A
CDS Count 6,008
Refseq Category na
Seq Rel Date 2016/01/06
Spanned Gaps 0
Species Taxid 287
SSU Count 1
Submitter University Laval
Taxid 287
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNDM00000000.1