Protochlamydia naegleriophila
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Verrucomicrobiota_A; c__Chlamydiia; o__Parachlamydiales; f__Parachlamydiaceae; g__Protochlamydia; s__Protochlamydia naegleriophila
Filtered NCBI Taxonomy d__Bacteria; p__Chlamydiae; c__Chlamydiia; o__Parachlamydiales; f__Parachlamydiaceae; g__Candidatus Protochlamydia; s__Candidatus Protochlamydia naegleriophila
Unfiltered NCBI Taxonomy d__Bacteria; x__PVC group; p__Chlamydiae; c__Chlamydiia; o__Parachlamydiales; f__Parachlamydiaceae; g__Candidatus Protochlamydia; s__Candidatus Protochlamydia naegleriophila
NCBI Strain Identifiers KNic
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 2
N50 Contigs 2,885,090 bp
Longest Contig 2,885,090 bp
Scaffold Count 2
N50 Scaffolds 2,885,090 bp
Longest Scaffold 2,885,090 bp
Genome Size 3,030,375 bp
Protein Count 2,573
Coding Density 84.06%
GC Percentage 42.44%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name PNK1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3539726
Country None
Date 2016-1-3
Genbank Assembly Accession GCA_001499655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 2
CDS Count 2,561
Refseq Category representative genome
Seq Rel Date 2016/01/03
Spanned Gaps 0
Species Taxid 389348
SSU Count 4
Submitter CHUV-UNIL
Taxid 389348
Total Gap Length 0
Translation Table 11
tRNA Count (total) 42
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None