Campylobacter_D coli_B
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter_D; s__Campylobacter_D coli_B
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Campylobacteraceae; g__Campylobacter; s__Campylobacter coli
NCBI Strain Identifiers a;n/a;M5D4;n
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001492295.1)
Genome Characteristics
CheckM Completeness 99.15%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 1
N50 Contigs 1,825,871 bp
Longest Contig 1,825,871 bp
Scaffold Count 1
N50 Scaffolds 1,825,871 bp
Longest Scaffold 1,825,871 bp
Genome Size 1,825,871 bp
Protein Count 1,818
Coding Density 93.03%
GC Percentage 31.08%
Ambiguous Bases N/A
GTDB representative GCA_001492295.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name M5D4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3683212
Country None
Date 2015-12-18
Genbank Assembly Accession GCA_001498995.1
Genome Category Isolate
Genome Representation full
Isolate M5D4
Isolation Source environmental waters
Latitude Longitude None
Molecule Count N/A
CDS Count 1,805
Refseq Category na
Seq Rel Date 2015/12/18
Spanned Gaps 0
Species Taxid 195
SSU Count 3
Taxid 195
Total Gap Length 0
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FBQV00000000.1