Clostridioides difficile
Isolate HQ 5S/16S/23S 6 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
NCBI Strain Identifiers IT1118
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 99.34%
CheckM Contamination 0.5%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 6
Contig Count 256
N50 Contigs 72,241 bp
Longest Contig 178,925 bp
Scaffold Count 256
N50 Scaffolds 72,241 bp
Longest Scaffold 178,925 bp
Genome Size 4,238,925 bp
Protein Count 3,974
Coding Density 84.11%
GC Percentage 28.55%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name IT1118
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3699156
Country None
Date 2015-12-15
Genbank Assembly Accession GCA_001497755.1
Genome Category Isolate
Genome Representation full
Isolate IT1118
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,006
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 0
Species Taxid 1496
SSU Count 1
Submitter IFPEN
Taxid 1496
Total Gap Length 0
Translation Table 11
tRNA Count (total) 6
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FAXM00000000.1