Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. actinidifoliorum
NCBI Strain Identifiers CFBP8043
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.67%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 176
N50 Contigs 132,698 bp
Longest Contig 430,812 bp
Scaffold Count 176
N50 Scaffolds 132,698 bp
Longest Scaffold 430,812 bp
Genome Size 6,058,685 bp
Protein Count 5,344
Coding Density 87.73%
GC Percentage 58.80%
Ambiguous Bases 15
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM149749v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03788033
Country France
Date 2016-1-5
Genbank Assembly Accession GCA_001497495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,684
Refseq Category na
Seq Rel Date 2016/01/05
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter INRA
Taxid 1674924
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJFM00000000.1