Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. actinidifoliorum
NCBI Strain Identifiers CFBP8180
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.67%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 256
N50 Contigs 98,002 bp
Longest Contig 302,384 bp
Scaffold Count 256
N50 Scaffolds 98,002 bp
Longest Scaffold 302,384 bp
Genome Size 6,261,671 bp
Protein Count 5,561
Coding Density 87.74%
GC Percentage 58.69%
Ambiguous Bases 56
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM149746v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03788139
Country France
Date 2016-1-5
Genbank Assembly Accession GCA_001497465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,866
Refseq Category na
Seq Rel Date 2016/01/05
Spanned Gaps 0
Species Taxid 317
SSU Count 2
Submitter INRA
Taxid 1674924
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJFN00000000.1