Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. actinidifoliorum
NCBI Strain Identifiers CFBP8161
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.67%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 206
N50 Contigs 111,837 bp
Longest Contig 385,714 bp
Scaffold Count 206
N50 Scaffolds 111,837 bp
Longest Scaffold 385,714 bp
Genome Size 6,245,039 bp
Protein Count 5,517
Coding Density 87.79%
GC Percentage 58.72%
Ambiguous Bases 41
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM149745v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03788034
Country France: Centre
Date 2016-1-5
Genbank Assembly Accession GCA_001497455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source leaf spots on Actinidia deliciosa hayward
Latitude Longitude None
Molecule Count N/A
CDS Count 5,825
Refseq Category na
Seq Rel Date 2016/01/05
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter INRA
Taxid 1674924
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LJFL00000000.1