Anaerococcus rubeinfantis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Tissierellales; f__Helcococcaceae; g__Anaerococcus; s__Anaerococcus rubeinfantis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Tissierellia; o__Tissierellales; f__Peptoniphilaceae; g__Anaerococcus; s__Anaerococcus rubeinfantis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Tissierellia; o__Tissierellales; f__Peptoniphilaceae; g__Anaerococcus; s__Anaerococcus rubeinfantis
NCBI Strain Identifiers Anaerococcus rubiinfantis
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.39%
CheckM Contamination 0.3%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 5
N50 Contigs 1,395,615 bp
Longest Contig 1,395,615 bp
Scaffold Count 3
N50 Scaffolds 1,764,657 bp
Longest Scaffold 1,764,657 bp
Genome Size 1,929,163 bp
Protein Count 1,810
Coding Density 89.29%
GC Percentage 29.45%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Anaerococcus rubiinfantis
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3673146
Country None
Date 2015-12-22
Genbank Assembly Accession GCA_001487145.1
Genome Category Isolate
Genome Representation full
Isolate Anaerococcus rubiinfantis
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,794
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 2
Species Taxid 1720199
SSU Count 2
Submitter URMITE
Taxid 1720199
Total Gap Length 233
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master FAVH00000000.1