Mediterraneibacter massiliensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Lachnospirales; f__Lachnospiraceae; g__Mediterraneibacter; s__Mediterraneibacter massiliensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Mediterraneibacter; s__Mediterraneibacter massiliensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Mediterraneibacter; s__Mediterraneibacter massiliensis
NCBI Strain Identifiers AT10
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.15%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 3
23S Count 5
tRNA Count 20
Contig Count 8
N50 Contigs 783,047 bp
Longest Contig 1,072,916 bp
Scaffold Count 5
N50 Scaffolds 2,164,948 bp
Longest Scaffold 2,164,948 bp
Genome Size 3,069,885 bp
Protein Count 2,868
Coding Density 89.45%
GC Percentage 42.44%
Ambiguous Bases 2
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Ruminococcus phoceensis
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3674418
Country None
Date 2015-12-22
Genbank Assembly Accession GCA_001487105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,877
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 3
Species Taxid 1720300
SSU Count 3
Submitter URMITE
Taxid 1720300
Total Gap Length 1582
Translation Table 11
tRNA Count (total) 52
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master FAVJ00000000.1