Paenibacillus_A rubinfantis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Paenibacillales; f__Paenibacillaceae; g__Paenibacillus_A; s__Paenibacillus_A rubinfantis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus rubinfantis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus rubinfantis
NCBI Strain Identifiers MT18
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.26%
CheckM Contamination 1.29%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 5
23S Count 7
tRNA Count 19
Contig Count 25
N50 Contigs 1,323,777 bp
Longest Contig 1,524,920 bp
Scaffold Count 20
N50 Scaffolds 1,323,777 bp
Longest Scaffold 1,600,714 bp
Genome Size 5,370,356 bp
Protein Count 4,906
Coding Density 87.13%
GC Percentage 53.02%
Ambiguous Bases 3
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Paenibacillus rubiinfantis
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA3673775
Country None
Date 2015-12-22
Genbank Assembly Accession GCA_001486505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,913
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 5
Species Taxid 1720296
SSU Count 8
Submitter URMITE
Taxid 1720296
Total Gap Length 828
Translation Table 11
tRNA Count (total) 72
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master FAUQ00000000.1