Tepidanaerobacter syntrophicus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Thermosediminibacteria; o__Thermosediminibacterales; f__Tepidanaerobacteraceae; g__Tepidanaerobacter; s__Tepidanaerobacter syntrophicus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Thermoanaerobacterales; f__Thermoanaerobacteraceae; g__Tepidanaerobacter; s__Tepidanaerobacter syntrophicus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Thermoanaerobacterales; f__Thermoanaerobacteraceae; g__Tepidanaerobacter; s__Tepidanaerobacter syntrophicus
NCBI Strain Identifiers JL
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 93.27%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 10
N50 Contigs 464,290 bp
Longest Contig 579,392 bp
Scaffold Count 9
N50 Scaffolds 464,290 bp
Longest Scaffold 582,261 bp
Genome Size 2,427,925 bp
Protein Count 2,304
Coding Density 89.46%
GC Percentage 38.63%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM148547v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00043586
Country None
Date 2015-12-8
Genbank Assembly Accession GCA_001485475.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source full-scale thermophilic anaerobic digester decomposing municipal solid wastes
Latitude Longitude None
Molecule Count N/A
CDS Count 2,288
Refseq Category representative genome
Seq Rel Date 2015/12/08
Spanned Gaps 1
Species Taxid 224999
SSU Count 4
Submitter AIST
Taxid 224999
Total Gap Length 25
Translation Table 11
tRNA Count (total) 58
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BCMU00000000.1