Pantoea cancerogenus_A
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea cancerogenus_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; x__unclassified Enterobacteriaceae; x__unclassified Enterobacteriaceae (miscellaneous); s__Type-E symbiont of Plautia stali
NCBI Strain Identifiers Ps-ISGKf70
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000773965.1)
Genome Characteristics
CheckM Completeness 99.99%
CheckM Contamination 1.03%
CheckM Strain Heterogeneity 16.67
5S Count 5
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 165
N50 Contigs 109,054 bp
Longest Contig 289,795 bp
Scaffold Count 165
N50 Scaffolds 109,054 bp
Longest Scaffold 289,795 bp
Genome Size 5,409,024 bp
Protein Count 5,158
Coding Density 87.91%
GC Percentage 53.75%
Ambiguous Bases 3
GTDB representative GCA_000773965.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name D_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00020672
Country Japan: Ishigaki island
Date 2015-11-11
Genbank Assembly Accession GCA_001485355.1
Genome Category Isolate
Genome Representation full
Isolate Ps-ISGKf70
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,017
Refseq Category na
Seq Rel Date 2015/11/11
Spanned Gaps 0
Species Taxid 1560357
SSU Count 3
Submitter The Open University of Japan
Taxid 1560357
Total Gap Length 0
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBOD00000000.1