Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea dispersa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; x__unclassified Enterobacteriaceae; x__unclassified Enterobacteriaceae (miscellaneous); s__Type-C symbiont of Plautia stali
NCBI Strain Identifiers Ps-ISGKf53
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000465555.2)
Genome Characteristics
CheckM Completeness 99.85%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 220
N50 Contigs 60,192 bp
Longest Contig 212,633 bp
Scaffold Count 220
N50 Scaffolds 60,192 bp
Longest Scaffold 212,633 bp
Genome Size 5,141,071 bp
Protein Count 4,877
Coding Density 87.33%
GC Percentage 57.44%
Ambiguous Bases 8
GTDB representative GCA_000465555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name C_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00020670
Country Japan: Ishigaki island
Date 2015-11-11
Genbank Assembly Accession GCA_001485315.1
Genome Category Isolate
Genome Representation full
Isolate Ps-ISGKf53
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,822
Refseq Category na
Seq Rel Date 2015/11/11
Spanned Gaps 0
Species Taxid 1560355
SSU Count 1
Submitter The Open University of Japan
Taxid 1560355
Total Gap Length 0
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBOB00000000.1