Companilactobacillus farciminis_A
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Companilactobacillus; s__Companilactobacillus farciminis_A
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus farciminis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus farciminis
NCBI Strain Identifiers NBRC 111452
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.3%
CheckM Contamination 0.79%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 58
N50 Contigs 70,772 bp
Longest Contig 196,881 bp
Scaffold Count 58
N50 Scaffolds 70,772 bp
Longest Scaffold 196,881 bp
Genome Size 2,364,209 bp
Protein Count 2,464
Coding Density 88.41%
GC Percentage 35.65%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148525v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00035848
Country Japan: Nagano; Saku
Date 2015-11-5
Genbank Assembly Accession GCA_001485255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fermented plant derived beverage (ENVO:0010170)
Latitude Longitude 36.2477 N 138.4963 E
Molecule Count N/A
CDS Count 2,286
Refseq Category na
Seq Rel Date 2015/11/05
Spanned Gaps 0
Species Taxid 1612
SSU Count 1
Submitter ARSOA Research & Development center, AOB Keioh Group Corporation
Taxid 1612
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BCLJ00000000.1