Virgibacillus picturae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Amphibacillaceae; g__Virgibacillus; s__Virgibacillus picturae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Oceanobacillus; s__Oceanobacillus picturae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Bacillaceae; g__Oceanobacillus; s__Oceanobacillus picturae
NCBI Strain Identifiers Heshi-B3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000612865.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 3
23S Count 1
tRNA Count 20
Contig Count 92
N50 Contigs 89,442 bp
Longest Contig 236,677 bp
Scaffold Count 92
N50 Scaffolds 89,442 bp
Longest Scaffold 236,677 bp
Genome Size 3,900,724 bp
Protein Count 3,987
Coding Density 84.76%
GC Percentage 38.96%
Ambiguous Bases N/A
GTDB representative GCA_000612865.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148523v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00029049
Country Japan: Fukui prefecture
Date 2015-12-8
Genbank Assembly Accession GCA_001485235.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Fermented food
Latitude Longitude None
Molecule Count N/A
CDS Count 3,890
Refseq Category na
Seq Rel Date 2015/12/08
Spanned Gaps 0
Species Taxid 171693
SSU Count 6
Submitter NODAI Genome Research Center, Tokyo University of Agriculture
Taxid 171693
Total Gap Length 0
Translation Table 11
tRNA Count (total) 61
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBXV00000000.1