Streptomyces scabiei
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces scabiei
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces scabiei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces scabiei
NCBI Strain Identifiers S58
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000091305.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.86%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 149
N50 Contigs 193,185 bp
Longest Contig 460,147 bp
Scaffold Count 147
N50 Scaffolds 193,185 bp
Longest Scaffold 460,147 bp
Genome Size 10,001,327 bp
Protein Count 8,739
Coding Density 87.31%
GC Percentage 71.54%
Ambiguous Bases N/A
GTDB representative GCA_000091305.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM148512v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00034890
Country Japan:Kagoshima; Nagashima
Date 2015-12-24
Genbank Assembly Accession GCA_001485125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source farmsoil
Latitude Longitude 32.0749 N 130.0739 E
Molecule Count N/A
CDS Count 8,831
Refseq Category na
Seq Rel Date 2015/12/24
Spanned Gaps 2
Species Taxid 1930
SSU Count 2
Submitter Plant Pathology and Entomology, Kagoshima Institute for Agricultural Development
Taxid 1930
Total Gap Length 286
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BCMM00000000.1