Streptomyces acidiscabies
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces acidiscabies
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces acidiscabies
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptomyces; s__Streptomyces acidiscabies
NCBI Strain Identifiers a10
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000242715.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 2.83%
CheckM Strain Heterogeneity 27.27
5S Count 7
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 279
N50 Contigs 82,196 bp
Longest Contig 441,174 bp
Scaffold Count 278
N50 Scaffolds 82,196 bp
Longest Scaffold 441,174 bp
Genome Size 10,725,420 bp
Protein Count 9,604
Coding Density 88.97%
GC Percentage 70.62%
Ambiguous Bases N/A
GTDB representative GCA_000242715.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM148510v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00034892
Country Japan:Kagoshima; Nagashima
Date 2015-12-24
Genbank Assembly Accession GCA_001485105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source farmsoil
Latitude Longitude 32.0749 N 130.0739 E
Molecule Count N/A
CDS Count 9,647
Refseq Category na
Seq Rel Date 2015/12/24
Spanned Gaps 1
Species Taxid 42234
SSU Count 2
Submitter Plant Pathology and Entomology, Kagoshima Institute for Agricultural Development
Taxid 42234
Total Gap Length 99
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BCMK00000000.1