Clostridioides difficile
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Peptostreptococcales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptostreptococcaceae; g__Clostridioides; s__Clostridioides difficile; x__Clostridioides difficile CD26A54_S
NCBI Strain Identifiers CD26A54_S
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000438845.1)
Genome Characteristics
CheckM Completeness 98.83%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 9
23S Count 9
tRNA Count 18
Contig Count 6
N50 Contigs 1,445,886 bp
Longest Contig 2,012,710 bp
Scaffold Count 6
N50 Scaffolds 1,445,886 bp
Longest Scaffold 2,012,710 bp
Genome Size 4,166,728 bp
Protein Count 3,691
Coding Density 82.98%
GC Percentage 28.72%
Ambiguous Bases N/A
GTDB representative GCA_000438845.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CD26A54SV1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03020580
Country Canada
Date 2016-1-5
Genbank Assembly Accession GCA_001484895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample
Latitude Longitude None
Molecule Count N/A
CDS Count 3,753
Refseq Category na
Seq Rel Date 2016/01/05
Spanned Gaps 0
Species Taxid 1496
SSU Count 9
Submitter Public Health Agency of Canada
Taxid 1222029
Total Gap Length 0
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMDL00000000.1