Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers AZ71
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 98.62%
CheckM Contamination 1.27%
CheckM Strain Heterogeneity 7.69
5S Count 0
16S Count 0
23S Count 0
tRNA Count 12
Contig Count 186
N50 Contigs 43,366 bp
Longest Contig 134,299 bp
Scaffold Count 186
N50 Scaffolds 43,366 bp
Longest Scaffold 134,299 bp
Genome Size 4,771,262 bp
Protein Count 4,582
Coding Density 88.19%
GC Percentage 50.67%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148437v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04202570
Country China: Heilongjiang
Date 2016-1-4
Genbank Assembly Accession GCA_001484375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gut
Latitude Longitude None
Molecule Count N/A
CDS Count 4,904
Refseq Category na
Seq Rel Date 2016/01/04
Spanned Gaps 0
Species Taxid 562
SSU Count 0
Submitter Harbin Medical University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 26
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLYK00000000.1