Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers AY71
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 0
23S Count 0
tRNA Count 12
Contig Count 117
N50 Contigs 70,433 bp
Longest Contig 168,639 bp
Scaffold Count 117
N50 Scaffolds 70,433 bp
Longest Scaffold 168,639 bp
Genome Size 4,644,632 bp
Protein Count 4,358
Coding Density 88.21%
GC Percentage 50.65%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148435v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04202569
Country China: Heilongjiang
Date 2016-1-4
Genbank Assembly Accession GCA_001484355.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gut
Latitude Longitude None
Molecule Count N/A
CDS Count 4,704
Refseq Category na
Seq Rel Date 2016/01/04
Spanned Gaps 0
Species Taxid 562
SSU Count 0
Submitter Harbin Medical University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 26
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLYJ00000000.1