Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers AY69
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 0
23S Count 0
tRNA Count 11
Contig Count 138
N50 Contigs 71,081 bp
Longest Contig 268,284 bp
Scaffold Count 138
N50 Scaffolds 71,081 bp
Longest Scaffold 268,284 bp
Genome Size 5,013,990 bp
Protein Count 4,748
Coding Density 88.76%
GC Percentage 50.56%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148429v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04198215
Country China: Heilongjiang
Date 2016-1-4
Genbank Assembly Accession GCA_001484295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gut
Latitude Longitude None
Molecule Count N/A
CDS Count 5,110
Refseq Category na
Seq Rel Date 2016/01/04
Spanned Gaps 0
Species Taxid 562
SSU Count 0
Submitter Harbin Medical University
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 27
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLYI00000000.1