Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
NCBI Strain Identifiers UM400AS
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900478295.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 26
N50 Contigs 98,139 bp
Longest Contig 298,452 bp
Scaffold Count 26
N50 Scaffolds 98,139 bp
Longest Scaffold 298,452 bp
Genome Size 1,616,650 bp
Protein Count 1,543
Coding Density 91.57%
GC Percentage 39.00%
Ambiguous Bases N/A
GTDB representative GCA_900478295.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148418v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04158749
Country Malaysia
Date 2016-12-12
Genbank Assembly Accession GCA_001484185.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Gastric biopsy
Latitude Longitude None
Molecule Count N/A
CDS Count 1,556
Refseq Category na
Seq Rel Date 2016/12/12
Spanned Gaps 0
Species Taxid 210
SSU Count 1
Submitter University of Malaya-University of Western Australia
Taxid 210
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLVY00000000.2