Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Micrococcaceae; g__Kocuria; s__Kocuria palustris
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Micrococcaceae; g__Kocuria; s__Kocuria palustris
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Micrococcaceae; g__Kocuria; s__Kocuria palustris
NCBI Strain Identifiers CD07_3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001275345.1)
Genome Characteristics
CheckM Completeness 99.34%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 18
N50 Contigs 416,347 bp
Longest Contig 646,712 bp
Scaffold Count 18
N50 Scaffolds 416,347 bp
Longest Scaffold 646,712 bp
Genome Size 2,833,425 bp
Protein Count 2,467
Coding Density 88.81%
GC Percentage 70.41%
Ambiguous Bases 19
GTDB representative GCA_001275345.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148377v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04376006
Country India: Chandigarh; PGIMER
Date 2015-12-31
Genbank Assembly Accession GCA_001483775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Duodenal mucosa of Celiac disease patient
Latitude Longitude None
Molecule Count N/A
CDS Count 2,462
Refseq Category na
Seq Rel Date 2015/12/31
Spanned Gaps 0
Species Taxid 71999
SSU Count 1
Submitter Institute of Microbial Technology
Taxid 71999
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material assembly from proxytype material
Unspanned Gaps 0
Version Status latest
WGS Master LQBJ00000000.1