Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Micrococcaceae; g__Kocuria; s__Kocuria polaris_A
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Micrococcaceae; g__Kocuria; s__Kocuria polaris
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Micrococcaceae; g__Kocuria; s__Kocuria polaris
NCBI Strain Identifiers CD08_4
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.68%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 42
N50 Contigs 221,530 bp
Longest Contig 562,617 bp
Scaffold Count 42
N50 Scaffolds 221,530 bp
Longest Scaffold 562,617 bp
Genome Size 3,833,718 bp
Protein Count 3,443
Coding Density 88.85%
GC Percentage 72.65%
Ambiguous Bases 32
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148375v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04376032
Country India: Chandigarh; PGIMER
Date 2015-12-31
Genbank Assembly Accession GCA_001483755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Duodenal mucosa of Celiac disease patient
Latitude Longitude None
Molecule Count N/A
CDS Count 3,411
Refseq Category na
Seq Rel Date 2015/12/31
Spanned Gaps 0
Species Taxid 136273
SSU Count 1
Submitter Institute of Microbial Technology
Taxid 136273
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LQBK00000000.1