Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas savastanoi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 2; s__Pseudomonas savastanoi; x__Pseudomonas savastanoi pv. fraxini
NCBI Strain Identifiers ICMP7711
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.76%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 686
N50 Contigs 24,027 bp
Longest Contig 138,975 bp
Scaffold Count 481
N50 Scaffolds 38,704 bp
Longest Scaffold 144,601 bp
Genome Size 6,023,921 bp
Protein Count 5,763
Coding Density 87.86%
GC Percentage 58.02%
Ambiguous Bases 265
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PfrICMP7711
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03976404
Country Netherlands
Date 2015-12-30
Genbank Assembly Accession GCA_001483545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,742
Refseq Category na
Seq Rel Date 2015/12/30
Spanned Gaps 205
Species Taxid 29438
SSU Count 1
Submitter University of Toronto
Taxid 360922
Total Gap Length 9879
Translation Table 11
tRNA Count (total) 35
Type Material assembly from pathotype material
Unspanned Gaps 0
Version Status latest
WGS Master LLJL00000000.1