Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers SMC4386
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 0.51%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 220
N50 Contigs 110,973 bp
Longest Contig 357,015 bp
Scaffold Count 178
N50 Scaffolds 172,635 bp
Longest Scaffold 654,661 bp
Genome Size 6,245,164 bp
Protein Count 5,809
Coding Density 89.80%
GC Percentage 66.54%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM148288v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04335864
Country India: Madurai; Aravind Eye Hospital
Date 2015-12-28
Genbank Assembly Accession GCA_001482885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source eye
Latitude Longitude None
Molecule Count N/A
CDS Count 5,921
Refseq Category na
Seq Rel Date 2015/12/28
Spanned Gaps 42
Species Taxid 287
SSU Count 1
Submitter University of Toronto
Taxid 287
Total Gap Length 1099
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOQZ00000000.1