Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers SMC4389
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.44%
CheckM Strain Heterogeneity 66.67
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 276
N50 Contigs 93,698 bp
Longest Contig 295,275 bp
Scaffold Count 242
N50 Scaffolds 124,099 bp
Longest Scaffold 484,965 bp
Genome Size 6,461,302 bp
Protein Count 6,085
Coding Density 89.35%
GC Percentage 66.34%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM148287v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04335866
Country India: Madurai; Aravind Eye Hospital
Date 2015-12-28
Genbank Assembly Accession GCA_001482875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source eye
Latitude Longitude None
Molecule Count N/A
CDS Count 6,211
Refseq Category na
Seq Rel Date 2015/12/28
Spanned Gaps 34
Species Taxid 287
SSU Count 1
Submitter University of Toronto
Taxid 287
Total Gap Length 702
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LORB00000000.1