Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Nocardia; s__Nocardia jinanensis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Nocardia; s__Nocardia jinanensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Nocardia; s__Nocardia jinanensis; x__Nocardia jinanensis NBRC 108249
NCBI Strain Identifiers NBRC 108249
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001613025.1)
Genome Characteristics
CheckM Completeness 63.75%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 188
N50 Contigs 62,271 bp
Longest Contig 194,120 bp
Scaffold Count 107
N50 Scaffolds 94,549 bp
Longest Scaffold 359,073 bp
Genome Size 5,039,245 bp
Protein Count 4,665
Coding Density 87.01%
GC Percentage 67.39%
Ambiguous Bases 415
GTDB representative GCA_001613025.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM148267v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04120645
Country China
Date 2015-12-24
Genbank Assembly Accession GCA_001482675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 4,600
Refseq Category na
Seq Rel Date 2015/12/24
Spanned Gaps 81
Species Taxid 382504
SSU Count 1
Submitter Nanyang Technological University
Taxid 1210082
Total Gap Length 2528
Translation Table 11
tRNA Count (total) 35
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LNDA00000000.1