Citrobacter freundii
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; s__Citrobacter freundii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Citrobacter; x__Citrobacter freundii complex; s__Citrobacter freundii
NCBI Strain Identifiers AMA 948
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900635425.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 50.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 108
N50 Contigs 180,261 bp
Longest Contig 516,564 bp
Scaffold Count 106
N50 Scaffolds 180,261 bp
Longest Scaffold 516,564 bp
Genome Size 5,332,198 bp
Protein Count 5,099
Coding Density 88.38%
GC Percentage 51.44%
Ambiguous Bases 4
GTDB representative GCA_900635425.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM148257v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04124438
Country Denmark
Date 2015-12-24
Genbank Assembly Accession GCA_001482575.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,275
Refseq Category na
Seq Rel Date 2015/12/24
Spanned Gaps 2
Species Taxid 546
SSU Count 1
Submitter Anette M. Hammerum
Taxid 546
Total Gap Length 115
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLJR00000000.1