Pseudoalteromonas rubra_B
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Alteromonadaceae; g__Pseudoalteromonas; s__Pseudoalteromonas rubra_B
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Pseudoalteromonadaceae; g__Pseudoalteromonas; s__Pseudoalteromonas rubra
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Pseudoalteromonadaceae; g__Pseudoalteromonas; s__Pseudoalteromonas rubra
NCBI Strain Identifiers SCSIO 6842
GTDB Type Material Designation not type material
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.48%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 10
23S Count 10
tRNA Count 20
Contig Count 3
N50 Contigs 4,532,889 bp
Longest Contig 4,532,889 bp
Scaffold Count 3
N50 Scaffolds 4,532,889 bp
Longest Scaffold 4,532,889 bp
Genome Size 5,913,780 bp
Protein Count 4,963
Coding Density 87.59%
GC Percentage 47.70%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM148238v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04320552
Country Indian Ocean: Bay of Bengal
Date 2015-12-24
Genbank Assembly Accession GCA_001482385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sea water
Latitude Longitude None
Molecule Count 3
CDS Count 4,838
Refseq Category representative genome
Seq Rel Date 2015/12/24
Spanned Gaps 0
Species Taxid 43658
SSU Count 10
Submitter South China Sea Institute of Oceanology
Taxid 43658
Total Gap Length 0
Translation Table 11
tRNA Count (total) 115
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None