Streptococcus pasteurianus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pasteurianus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus gallolyticus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus gallolyticus
NCBI Strain Identifiers ICDDRB-NRC-S3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900478025.1)
Genome Characteristics
CheckM Completeness 99.63%
CheckM Contamination 0.56%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 6
tRNA Count 20
Contig Count 2
N50 Contigs 1,787,567 bp
Longest Contig 1,787,567 bp
Scaffold Count 2
N50 Scaffolds 1,787,567 bp
Longest Scaffold 1,787,567 bp
Genome Size 2,131,986 bp
Protein Count 2,063
Coding Density 85.17%
GC Percentage 37.53%
Ambiguous Bases N/A
GTDB representative GCA_900478025.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148147v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04348602
Country Bangladesh: Dhaka; icddr;b Hospital
Date 2015-12-23
Genbank Assembly Accession GCA_001481475.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool of a hospitalized child
Latitude Longitude 25 N 90 E
Molecule Count N/A
CDS Count 2,122
Refseq Category na
Seq Rel Date 2015/12/23
Spanned Gaps 0
Species Taxid 315405
SSU Count 6
Submitter Nestle Research Center and Nestle Institute of Health Sciences
Taxid 315405
Total Gap Length 0
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LPVQ00000000.1