Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Cupriavidus; s__Cupriavidus necator
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Cupriavidus; s__Cupriavidus necator
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Cupriavidus; s__Cupriavidus necator
NCBI Strain Identifiers PHE3-6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000219215.1)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.49%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 118
N50 Contigs 125,732 bp
Longest Contig 293,011 bp
Scaffold Count 118
N50 Scaffolds 125,732 bp
Longest Scaffold 293,011 bp
Genome Size 7,267,813 bp
Protein Count 6,701
Coding Density 88.24%
GC Percentage 66.33%
Ambiguous Bases N/A
GTDB representative GCA_000219215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148145v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04126913
Country Japan: Niigata
Date 2015-12-23
Genbank Assembly Accession GCA_001481455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source environmental soil
Latitude Longitude None
Molecule Count N/A
CDS Count 6,706
Refseq Category na
Seq Rel Date 2015/12/23
Spanned Gaps 0
Species Taxid 106590
SSU Count 1
Submitter Nagaoka University of Technology
Taxid 106590
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LMVF00000000.1